Detailed information of SNP:
|
SNP ID:
sf0216971887(Gbrowse)
Chromosome: chr02 Position: 16971887 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 52.65% | 47.35% |
| All Indica | 799 | 77.35% | 22.65% |
| All Japonica | 495 | 16.36% | 83.64% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216971887 | T->A | INTERGENIC | None |