Detailed information of SNP:
|
SNP ID:
sf0216972582(Gbrowse)
Chromosome: chr02 Position: 16972582 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 84.38% | 15.62% |
| All Indica | 795 | 78.62% | 21.38% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 371 | 73.32% | 26.68% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216972582 | C->T | LOC_Os02g28710(LOC_Os02g28710.1) | INTRON |