Detailed information of SNP:
|
SNP ID:
sf0216975098(Gbrowse)
Chromosome: chr02 Position: 16975098 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 60.00% | 40.00% |
| All Indica | 796 | 52.76% | 47.24% |
| All Japonica | 496 | 83.67% | 16.33% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 39.84% | 60.16% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216975098 | A->G | INTERGENIC | None |