Detailed information of SNP:



SNP ID: sf0216975098(Gbrowse)

Chromosome: chr02

Position: 16975098
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1415 60.00% 40.00%
All Indica796 52.76% 47.24%
All Japonica496 83.67% 16.33%
Aus67 0.00% 100.00%
Indica I374 39.84% 60.16%
Indica II212 58.49% 41.51%
Indica Intermediate210 70.00% 30.00%
Temperate Japonica334 98.80% 1.20%
Tropical Japonica94 29.79% 70.21%
Japonica Intermediate68 83.82% 16.18%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 30.95% 69.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216975098 A->G INTERGENIC None