Detailed information of SNP:
|
SNP ID:
sf0216977115(Gbrowse)
Chromosome: chr02 Position: 16977115 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1307 | 97.70% | 2.30% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 387 | 92.51% | 7.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 247 | 89.88% | 10.12% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 54 | 92.59% | 7.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216977115 | T->C | LOC_Os02g28720(LOC_Os02g28720.1) | INTRON |