Detailed information of SNP:



SNP ID: sf0216982361(Gbrowse)

Chromosome: chr02

Position: 16982361
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1337 97.01% 2.99%
All Indica799 99.75% 0.25%
All Japonica415 91.08% 8.92%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica269 86.99% 13.01%
Tropical Japonica87 100.00% 0.00%
Japonica Intermediate59 96.61% 3.39%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0216982361 C->T INTERGENIC None