Detailed information of SNP:
|
SNP ID:
sf0216989589(Gbrowse)
Chromosome: chr02 Position: 16989589 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.02% | 45.98% |
| All Indica | 798 | 78.07% | 21.93% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 374 | 74.06% | 25.94% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0216989589 | G->A | INTERGENIC | None |