Detailed information of SNP:
|
SNP ID:
sf0217005832(Gbrowse)
Chromosome: chr02 Position: 17005832 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 92.33% | 7.67% |
| All Indica | 741 | 88.80% | 11.20% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 56 | 66.07% | 33.93% |
| Indica I | 339 | 86.73% | 13.27% |
| Indica II | 194 | 82.99% | 17.01% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217005832 | C->T | INTERGENIC | None |