Detailed information of SNP:
|
SNP ID:
sf0217005850(Gbrowse)
Chromosome: chr02 Position: 17005850 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1317 | 90.89% | 9.11% |
| All Indica | 700 | 83.29% | 16.71% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 331 | 90.33% | 9.67% |
| Indica II | 184 | 78.80% | 21.20% |
| Indica Intermediate | 185 | 75.14% | 24.86% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217005850 | G->A | INTERGENIC | None |