Detailed information of SNP:
|
SNP ID:
sf0217013106(Gbrowse)
Chromosome: chr02 Position: 17013106 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1167 | 79.95% | 20.05% |
| All Indica | 557 | 68.04% | 31.96% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 290 | 69.31% | 30.69% |
| Indica II | 129 | 48.84% | 51.16% |
| Indica Intermediate | 138 | 83.33% | 16.67% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 36 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217013106 | T->C | INTERGENIC | None |