Detailed information of SNP:
|
SNP ID:
sf0217016861(Gbrowse)
Chromosome: chr02 Position: 17016861 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 77.39% | 22.61% |
| All Indica | 796 | 73.99% | 26.01% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 372 | 66.13% | 33.87% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217016861 | G->A | LOC_Os02g28770(LOC_Os02g28770.1) | INTRON |