Detailed information of SNP:
SNP ID:
sf0217017341(Gbrowse)
Chromosome: chr02 Position: 17017341 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 70.52% | 29.48% |
All Indica | 798 | 48.75% | 51.25% |
All Japonica | 497 | 99.40% | 0.60% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 60.96% | 39.04% |
Indica II | 213 | 44.60% | 55.40% |
Indica Intermediate | 211 | 31.28% | 68.72% |
Temperate Japonica | 335 | 99.40% | 0.60% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 98.53% | 1.47% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0217017341 | G->A | LOC_Os02g28770(LOC_Os02g28770.1) | INTRON |