Detailed information of SNP:



SNP ID: sf0217017341(Gbrowse)

Chromosome: chr02

Position: 17017341
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 70.52% 29.48%
All Indica798 48.75% 51.25%
All Japonica497 99.40% 0.60%
Aus67 100.00% 0.00%
Indica I374 60.96% 39.04%
Indica II213 44.60% 55.40%
Indica Intermediate211 31.28% 68.72%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0217017341 G->A LOC_Os02g28770(LOC_Os02g28770.1) INTRON