Detailed information of SNP:
|
SNP ID:
sf0217017715(Gbrowse)
Chromosome: chr02 Position: 17017715 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 86.18% | 13.82% |
| All Indica | 794 | 81.49% | 18.51% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 39.06% | 60.94% |
| Indica I | 371 | 76.55% | 23.45% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217017715 | A->G | LOC_Os02g28770(LOC_Os02g28770.1) | Synonymous |