Detailed information of SNP:
|
SNP ID:
sf0217019417(Gbrowse)
Chromosome: chr02 Position: 17019417 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1282 | 93.14% | 6.86% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 363 | 79.06% | 20.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 220 | 78.18% | 21.82% |
| Tropical Japonica | 88 | 94.32% | 5.68% |
| Japonica Intermediate | 55 | 58.18% | 41.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217019417 | T->A | LOC_Os02g28770(LOC_Os02g28770.1) | Synonymous |