Detailed information of SNP:
|
SNP ID:
sf0217022689(Gbrowse)
Chromosome: chr02 Position: 17022689 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 71.14% | 28.86% |
| All Indica | 797 | 49.81% | 50.19% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 62.67% | 37.33% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 209 | 32.54% | 67.46% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217022689 | G->C | LOC_Os02g28780(LOC_Os02g28780.1) | Non-Synonymous SNP |