Detailed information of SNP:
|
SNP ID:
sf0217023637(Gbrowse)
Chromosome: chr02 Position: 17023637 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1153 | 85.43% | 14.57% |
| All Indica | 565 | 75.40% | 24.60% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 53 | 66.04% | 33.96% |
| Indica I | 285 | 77.89% | 22.11% |
| Indica II | 140 | 63.57% | 36.43% |
| Indica Intermediate | 140 | 82.14% | 17.86% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 7 | 57.14% | 42.86% |
| Intermediate | 34 | 88.24% | 11.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217023637 | G->A | LOC_Os02g28780(LOC_Os02g28780.1) | INTRON |