Detailed information of SNP:
|
SNP ID:
sf0217025438(Gbrowse)
Chromosome: chr02 Position: 17025438 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 72.88% | 27.12% |
| All Indica | 792 | 52.78% | 47.22% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 66.40% | 33.60% |
| Indica II | 211 | 46.45% | 53.55% |
| Indica Intermediate | 209 | 34.93% | 65.07% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217025438 | G->A | LOC_Os02g28790(LOC_Os02g28790.1) | Synonymous |