Detailed information of SNP:
|
SNP ID:
sf0217025800(Gbrowse)
Chromosome: chr02 Position: 17025800 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 77.47% | 22.53% |
| All Indica | 796 | 74.25% | 25.75% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 65.78% | 34.22% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217025800 | T->C | LOC_Os02g28790(LOC_Os02g28790.1) | Non-Synonymous SNP |