Detailed information of SNP:



SNP ID: sf0217027673(Gbrowse)

Chromosome: chr02

Position: 17027673
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 71.77% 28.23%
All Indica797 50.94% 49.06%
All Japonica497 99.40% 0.60%
Aus67 100.00% 0.00%
Indica I373 64.34% 35.66%
Indica II213 44.13% 55.87%
Indica Intermediate211 34.12% 65.88%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0217027673 C->T INTERGENIC None