Detailed information of SNP:
|
SNP ID:
sf0217033310(Gbrowse)
Chromosome: chr02 Position: 17033310 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.75% | 38.25% |
| All Indica | 797 | 53.07% | 46.93% |
| All Japonica | 497 | 84.31% | 15.69% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 39.30% | 60.70% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217033310 | G->A | INTERGENIC | None |