Detailed information of SNP:
|
SNP ID:
sf0217038625(Gbrowse)
Chromosome: chr02 Position: 17038625 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 68.57% | 31.43% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 480 | 13.33% | 86.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 327 | 5.20% | 94.80% |
| Tropical Japonica | 89 | 37.08% | 62.92% |
| Japonica Intermediate | 64 | 21.88% | 78.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217038625 | T->C | INTERGENIC | None |