Detailed information of SNP:
|
SNP ID:
sf0217041499(Gbrowse)
Chromosome: chr02 Position: 17041499 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.45% | 29.55% |
| All Indica | 799 | 48.69% | 51.31% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217041499 | G->A | LOC_Os02g28830(LOC_Os02g28830.1) | Synonymous |