Detailed information of SNP:
|
SNP ID:
sf0217045306(Gbrowse)
Chromosome: chr02 Position: 17045306 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.47% | 19.53% |
| All Indica | 798 | 74.06% | 25.94% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 66.04% | 33.96% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217045306 | G->A | LOC_Os02g28830(LOC_Os02g28830.1) | INTRON |