Detailed information of SNP:
|
SNP ID:
sf0217053567(Gbrowse)
Chromosome: chr02 Position: 17053567 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 52.36% | 47.64% |
| All Indica | 799 | 25.66% | 74.34% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 30.93% | 69.07% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 211 | 9.00% | 91.00% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217053567 | A->G | INTERGENIC | None |