Detailed information of SNP:
|
SNP ID:
sf0217063470(Gbrowse)
Chromosome: chr02 Position: 17063470 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.18% | 49.82% |
| All Indica | 799 | 76.97% | 23.03% |
| All Japonica | 497 | 8.65% | 91.35% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 72.27% | 27.73% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217063470 | C->T | INTERGENIC | None |