Detailed information of SNP:
|
SNP ID:
sf0217065574(Gbrowse)
Chromosome: chr02 Position: 17065574 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 70.53% | 29.47% |
| All Indica | 796 | 48.62% | 51.38% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 61.50% | 38.50% |
| Indica II | 212 | 43.87% | 56.13% |
| Indica Intermediate | 210 | 30.48% | 69.52% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217065574 | C->T | INTERGENIC | None |