Detailed information of SNP:
|
SNP ID:
sf0217080214(Gbrowse)
Chromosome: chr02 Position: 17080214 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.95% | 49.05% |
| All Indica | 799 | 77.97% | 22.03% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 73.60% | 26.40% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217080214 | G->A | LOC_Os02g28870(LOC_Os02g28870.1) | Non-Synonymous SNP |