Detailed information of SNP:
|
SNP ID:
sf0217087201(Gbrowse)
Chromosome: chr02 Position: 17087201 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 86.10% | 13.90% |
| All Indica | 797 | 81.43% | 18.57% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 76.74% | 23.26% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217087201 | A->G | INTERGENIC | None |