Detailed information of SNP:
|
SNP ID:
sf0217088040(Gbrowse)
Chromosome: chr02 Position: 17088040 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 50.46% | 49.54% |
| All Indica | 795 | 23.52% | 76.48% |
| All Japonica | 497 | 91.35% | 8.65% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 27.54% | 72.46% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 208 | 7.21% | 92.79% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217088040 | C->T | INTERGENIC | None |