Detailed information of SNP:
|
SNP ID:
sf0217088957(Gbrowse)
Chromosome: chr02 Position: 17088957 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 53.08% | 46.92% |
| All Indica | 780 | 27.18% | 72.82% |
| All Japonica | 496 | 92.14% | 7.86% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 359 | 30.36% | 69.64% |
| Indica II | 211 | 37.44% | 62.56% |
| Indica Intermediate | 210 | 11.43% | 88.57% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217088957 | C->T | INTERGENIC | None |