Detailed information of SNP:
|
SNP ID:
sf0217092932(Gbrowse)
Chromosome: chr02 Position: 17092932 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1340 | 96.57% | 3.43% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 418 | 89.23% | 10.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 281 | 85.41% | 14.59% |
| Tropical Japonica | 81 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 92.86% | 7.14% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217092932 | G->T | INTERGENIC | None |