Detailed information of SNP:
|
SNP ID:
sf0217098624(Gbrowse)
Chromosome: chr02 Position: 17098624 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 94.12% | 5.88% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 406 | 83.74% | 16.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 264 | 99.62% | 0.38% |
| Tropical Japonica | 88 | 44.32% | 55.68% |
| Japonica Intermediate | 54 | 70.37% | 29.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217098624 | C->T | INTERGENIC | None |