Detailed information of SNP:
|
SNP ID:
sf0217099368(Gbrowse)
Chromosome: chr02 Position: 17099368 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 70.60% | 29.40% |
| All Indica | 793 | 49.43% | 50.57% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 62.20% | 37.80% |
| Indica II | 212 | 44.81% | 55.19% |
| Indica Intermediate | 208 | 31.25% | 68.75% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 6 | 83.33% | 16.67% |
| Intermediate | 36 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217099368 | C->G | INTERGENIC | None |