Detailed information of SNP:
|
SNP ID:
sf0217100297(Gbrowse)
Chromosome: chr02 Position: 17100297 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.69% | 31.31% |
| All Indica | 798 | 47.99% | 52.01% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 59.73% | 40.27% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 210 | 30.95% | 69.05% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217100297 | A->T | INTERGENIC | None |