Detailed information of SNP:
|
SNP ID:
sf0217102972(Gbrowse)
Chromosome: chr02 Position: 17102972 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 84.62% | 15.38% |
| All Indica | 798 | 79.95% | 20.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 74.60% | 25.40% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217102972 | C->A | INTERGENIC | None |