Detailed information of SNP:
|
SNP ID:
sf0217103992(Gbrowse)
Chromosome: chr02 Position: 17103992 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 80.59% | 19.41% |
| All Indica | 797 | 73.90% | 26.10% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 65.51% | 34.49% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217103992 | T->C | LOC_Os02g28890(LOC_Os02g28890.1) | INTRON |