Detailed information of SNP:
|
SNP ID:
sf0217104602(Gbrowse)
Chromosome: chr02 Position: 17104602 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 89.35% | 10.65% |
| All Indica | 782 | 87.60% | 12.40% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 64 | 39.06% | 60.94% |
| Indica I | 366 | 85.52% | 14.48% |
| Indica II | 206 | 81.55% | 18.45% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217104602 | G->A | INTERGENIC | None |