Detailed information of SNP:
|
SNP ID:
sf0217105791(Gbrowse)
Chromosome: chr02 Position: 17105791 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 69.97% | 30.03% |
| All Indica | 797 | 97.11% | 2.89% |
| All Japonica | 492 | 20.33% | 79.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 332 | 16.57% | 83.43% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217105791 | T->C | INTERGENIC | None |