Detailed information of SNP:
|
SNP ID:
sf0217106972(Gbrowse)
Chromosome: chr02 Position: 17106972 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.81% | 49.19% |
| All Indica | 797 | 78.29% | 21.71% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 74.13% | 25.87% |
| Indica II | 211 | 69.67% | 30.33% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217106972 | G->A | INTERGENIC | None |