Detailed information of SNP:
|
SNP ID:
sf0217107175(Gbrowse)
Chromosome: chr02 Position: 17107175 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 70.91% | 29.09% |
| All Indica | 794 | 51.51% | 48.49% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 62.73% | 37.27% |
| Indica II | 211 | 46.45% | 53.55% |
| Indica Intermediate | 210 | 36.67% | 63.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217107175 | C->T | INTERGENIC | None |