Detailed information of SNP:
|
SNP ID:
sf0217110631(Gbrowse)
Chromosome: chr02 Position: 17110631 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.30% | 48.70% |
| All Indica | 799 | 78.85% | 21.15% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217110631 | C->T | INTERGENIC | None |