Detailed information of SNP:
|
SNP ID:
sf0217118203(Gbrowse)
Chromosome: chr02 Position: 17118203 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.08% | 47.92% |
| All Indica | 799 | 23.03% | 76.97% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 26.93% | 73.07% |
| Indica II | 213 | 32.86% | 67.14% |
| Indica Intermediate | 211 | 6.16% | 93.84% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217118203 | G->A | INTERGENIC | None |