Detailed information of SNP:
|
SNP ID:
sf0217118593(Gbrowse)
Chromosome: chr02 Position: 17118593 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 83.77% | 16.23% |
| All Indica | 798 | 78.57% | 21.43% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 73.80% | 26.20% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217118593 | A->G | INTERGENIC | None |