Detailed information of SNP:
|
SNP ID:
sf0217119860(Gbrowse)
Chromosome: chr02 Position: 17119860 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1316 | 72.80% | 27.20% |
| All Indica | 797 | 99.00% | 1.00% |
| All Japonica | 398 | 14.07% | 85.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 263 | 15.59% | 84.41% |
| Tropical Japonica | 75 | 9.33% | 90.67% |
| Japonica Intermediate | 60 | 13.33% | 86.67% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217119860 | T->C | LOC_Os02g28910(LOC_Os02g28910.1) | Non-Synonymous SNP |