Detailed information of SNP:
|
SNP ID:
sf0217119986(Gbrowse)
Chromosome: chr02 Position: 17119986 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.08% | 47.92% |
| All Indica | 799 | 22.65% | 77.35% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 26.93% | 73.07% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 211 | 5.21% | 94.79% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217119986 | C->T | INTERGENIC | None |