Detailed information of SNP:
|
SNP ID:
sf0217120157(Gbrowse)
Chromosome: chr02 Position: 17120157 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 51.41% | 48.59% |
| All Indica | 798 | 21.93% | 78.07% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 25.94% | 74.06% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 211 | 5.21% | 94.79% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217120157 | T->C | INTERGENIC | None |