Detailed information of SNP:
|
SNP ID:
sf0217127913(Gbrowse)
Chromosome: chr02 Position: 17127913 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 52.33% | 47.67% |
| All Indica | 797 | 23.59% | 76.41% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 28.07% | 71.93% |
| Indica II | 212 | 33.49% | 66.51% |
| Indica Intermediate | 211 | 5.69% | 94.31% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217127913 | G->A | LOC_Os02g28940(LOC_Os02g28940.1) | SNPs that introduce stop codons |