Detailed information of SNP:
|
SNP ID:
sf0217128410(Gbrowse)
Chromosome: chr02 Position: 17128410 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 84.59% | 15.41% |
| All Indica | 796 | 79.90% | 20.10% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 373 | 74.80% | 25.20% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217128410 | G->T | LOC_Os02g28940(LOC_Os02g28940.1) | Non-Synonymous SNP |