Detailed information of SNP:
|
SNP ID:
sf0217130138(Gbrowse)
Chromosome: chr02 Position: 17130138 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 57.75% | 42.25% |
| All Indica | 793 | 32.28% | 67.72% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 373 | 37.53% | 62.47% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 207 | 18.84% | 81.16% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217130138 | C->T | LOC_Os02g28950(LOC_Os02g28950.1) | Non-Synonymous SNP |