Detailed information of SNP:
|
SNP ID:
sf0217131770(Gbrowse)
Chromosome: chr02 Position: 17131770 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 58.50% | 41.50% |
| All Indica | 797 | 89.21% | 10.79% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 85.56% | 14.44% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217131770 | G->A | LOC_Os02g28960(LOC_Os02g28960.1) | Non-Synonymous SNP |