Detailed information of SNP:
|
SNP ID:
sf0217131864(Gbrowse)
Chromosome: chr02 Position: 17131864 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 65.61% | 34.39% |
| All Indica | 799 | 51.56% | 48.44% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 38.13% | 61.87% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0217131864 | T->C | LOC_Os02g28960(LOC_Os02g28960.1) | Synonymous |